Class: Aliquot (Aliquot)

Specific tubes or details of a Sample.

classDiagram class Aliquot click Aliquot href "../Aliquot" AccessControlledRecord <|-- Aliquot click AccessControlledRecord href "../AccessControlledRecord" Aliquot : availablity_status Aliquot --> "0..1" EnumAvailabilityStatus : availablity_status click EnumAvailabilityStatus href "../EnumAvailabilityStatus" Aliquot : concentration_number Aliquot : concentration_unit Aliquot : external_id Aliquot : has_access_policy Aliquot --> "0..1" AccessPolicy : has_access_policy click AccessPolicy href "../AccessPolicy" Aliquot : id Aliquot : quantity_number Aliquot : quantity_units

Inheritance

Thing
- AccessControlledRecord
  - Aliquot

Slots

Name	Cardinality and Range	Description	Inheritance
availablity_status	0..1 EnumAvailabilityStatus	Can this Sample be requested for further analysis?	direct
quantity_number	0..1 Float	The total quantity of the specimen	direct
quantity_units	0..1 Uriorcurie	The structured term defining the units of the quantity	direct
concentration_number	0..1 Float	What is the concentration of the analyte in the Aliquot?	direct
concentration_unit	0..1 Uriorcurie	Units associated with the concentration of the analyte in the Aliquot? UCUM c...	direct
has_access_policy	0..1 AccessPolicy	Which access policy applies to this element?	AccessControlledRecord
id	1 String	ID associated with a class	Thing
external_id	* Uriorcurie	Other identifiers for this entity, eg, from the submitting study or in system...	Thing

Usages

used by	used in	type	used
Sample	aliquots	range	Aliquot

Identifier and Mapping Information

Schema Source

from schema: https://anvilproject.org/acr-harmonized-data-model

Mappings

Mapping Type	Mapped Value
self	anvil:Aliquot
native	anvil:Aliquot

LinkML Source

Direct

name: Aliquot
description: Specific tubes or details of a Sample.
title: Aliquot
from_schema: https://anvilproject.org/acr-harmonized-data-model
is_a: AccessControlledRecord
slots:
- availablity_status
- quantity_number
- quantity_units
- concentration_number
- concentration_unit

Induced

name: Aliquot
description: Specific tubes or details of a Sample.
title: Aliquot
from_schema: https://anvilproject.org/acr-harmonized-data-model
is_a: AccessControlledRecord
attributes:
  availablity_status:
    name: availablity_status
    description: Can this Sample be requested for further analysis?
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: availablity_status
    owner: Aliquot
    domain_of:
    - Sample
    - Aliquot
    range: EnumAvailabilityStatus
    required: false
  quantity_number:
    name: quantity_number
    description: The total quantity of the specimen
    title: Quantity
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: quantity_number
    owner: Aliquot
    domain_of:
    - Sample
    - Aliquot
    range: float
  quantity_units:
    name: quantity_units
    description: The structured term defining the units of the quantity.
    title: Quantity Units
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: quantity_units
    owner: Aliquot
    domain_of:
    - Sample
    - Aliquot
    range: uriorcurie
  concentration_number:
    name: concentration_number
    description: What is the concentration of the analyte in the Aliquot?
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: concentration_number
    owner: Aliquot
    domain_of:
    - Aliquot
    range: float
    required: false
  concentration_unit:
    name: concentration_unit
    description: Units associated with the concentration of the analyte in the Aliquot?
      UCUM coding preferred (with curie, UCUM)
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: concentration_unit
    owner: Aliquot
    domain_of:
    - Aliquot
    range: uriorcurie
    required: false
  has_access_policy:
    name: has_access_policy
    description: Which access policy applies to this element?
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: has_access_policy
    owner: Aliquot
    domain_of:
    - AccessControlledRecord
    range: AccessPolicy
    inlined: false
  id:
    name: id
    description: ID associated with a class
    title: ID
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    identifier: true
    alias: id
    owner: Aliquot
    domain_of:
    - Thing
    range: string
    required: true
    multivalued: false
  external_id:
    name: external_id
    description: Other identifiers for this entity, eg, from the submitting study
      or in systems link dbGaP
    title: External Identifiers
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: external_id
    owner: Aliquot
    domain_of:
    - Thing
    range: uriorcurie
    required: false
    multivalued: true