Class: File (File)

File

classDiagram class File click File href "../File" AccessControlledRecord <|-- File click AccessControlledRecord href "../AccessControlledRecord" File : data_type File --> "0..1" EDAMDataTypes : data_type click EDAMDataTypes href "../EDAMDataTypes" File : drs_uri File : external_id File : file_metadata File --> "0..1" FileMetadata : file_metadata click FileMetadata href "../FileMetadata" File : filename File : format File --> "0..1" EDAMFormats : format click EDAMFormats href "../EDAMFormats" File : has_access_policy File --> "0..1" AccessPolicy : has_access_policy click AccessPolicy href "../AccessPolicy" File : id File : sample File --> "*" Sample : sample click Sample href "../Sample" File : size File : subject File --> "*" Subject : subject click Subject href "../Subject"

Inheritance

Thing
- AccessControlledRecord
  - File

Slots

Name	Cardinality and Range	Description	Inheritance
subject	* Subject	The Subject(s) which this file describes	direct
sample	* Sample	The Samples(s) used to generate data in this file	direct
filename	0..1 String	The name of the file	direct
format	0..1 EDAMFormats	The format of the file	direct
data_type	0..1 EDAMDataTypes	The type of data within this file	direct
size	0..1 Integer	Size of the file, in Bytes	direct
drs_uri	0..1 Uriorcurie	DRS location to access the data	direct
file_metadata	0..1 FileMetadata	Additional metadata about the contents of the file, eg, genome reference buil...	direct
has_access_policy	0..1 AccessPolicy	Which access policy applies to this element?	AccessControlledRecord
id	1 String	ID associated with a class	Thing
external_id	* Uriorcurie	Other identifiers for this entity, eg, from the submitting study or in system...	Thing

Identifier and Mapping Information

Schema Source

from schema: https://anvilproject.org/acr-harmonized-data-model

Mappings

Mapping Type	Mapped Value
self	anvil:File
native	anvil:File

LinkML Source

Direct

name: File
description: File
title: File
from_schema: https://anvilproject.org/acr-harmonized-data-model
is_a: AccessControlledRecord
slots:
- subject
- sample
- filename
- format
- data_type
- size
- drs_uri
- file_metadata

Induced

name: File
description: File
title: File
from_schema: https://anvilproject.org/acr-harmonized-data-model
is_a: AccessControlledRecord
attributes:
  subject:
    name: subject
    description: The Subject(s) which this file describes.
    title: Subject(s) of file
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: subject
    owner: File
    domain_of:
    - File
    range: Subject
    multivalued: true
    inlined: false
  sample:
    name: sample
    description: The Samples(s) used to generate data in this file.
    title: Sample(s) related to file
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: sample
    owner: File
    domain_of:
    - File
    range: Sample
    multivalued: true
    inlined: false
  filename:
    name: filename
    description: The name of the file.
    title: Filename
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: filename
    owner: File
    domain_of:
    - File
    range: string
  format:
    name: format
    description: The format of the file.
    title: File Format
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: format
    owner: File
    domain_of:
    - File
    range: EDAMFormats
  data_type:
    name: data_type
    description: The type of data within this file.
    title: Data Type
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: data_type
    owner: File
    domain_of:
    - File
    range: EDAMDataTypes
  size:
    name: size
    description: Size of the file, in Bytes.
    title: File Size
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: size
    owner: File
    domain_of:
    - File
    range: integer
  drs_uri:
    name: drs_uri
    description: DRS location to access the data.
    title: DRS URI
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: drs_uri
    owner: File
    domain_of:
    - File
    range: uriorcurie
  file_metadata:
    name: file_metadata
    description: Additional metadata about the contents of the file, eg, genome reference
      build.
    title: File Metadata
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: file_metadata
    owner: File
    domain_of:
    - File
    range: FileMetadata
  has_access_policy:
    name: has_access_policy
    description: Which access policy applies to this element?
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: has_access_policy
    owner: File
    domain_of:
    - AccessControlledRecord
    range: AccessPolicy
    inlined: false
  id:
    name: id
    description: ID associated with a class
    title: ID
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    identifier: true
    alias: id
    owner: File
    domain_of:
    - Thing
    range: string
    required: true
    multivalued: false
  external_id:
    name: external_id
    description: Other identifiers for this entity, eg, from the submitting study
      or in systems link dbGaP
    title: External Identifiers
    from_schema: https://anvilproject.org/acr-harmonized-data-model
    rank: 1000
    alias: external_id
    owner: File
    domain_of:
    - Thing
    range: uriorcurie
    required: false
    multivalued: true