Harmony Mappings
Mappings between internal Enums and external terminologies for DBT FHIR ETL.
Download Contents in Map Dragon Harmony CSV format
| Local Code | Local Display | Class Name | Slot Name | Target Code | Target System |
|---|---|---|---|---|---|
| exact | Exact | Demographics | date_of_birth_type | exact | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-date-of-birth-method/ |
| year_only | Year Only | Demographics | date_of_birth_type | year-only | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-date-of-birth-method/ |
| shifted | Shifted | Demographics | date_of_birth_type | shifted | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-date-of-birth-method/ |
| decade_only | Decade Only | Demographics | date_of_birth_type | decade-only | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-date-of-birth-method/ |
| other | Other | Demographics | date_of_birth_type | other | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-date-of-birth-method/ |
| female | Female | Demographics | sex | female | http://hl7.org/fhir/administrative-gender/ |
| male | Male | Demographics | sex | male | http://hl7.org/fhir/administrative-gender/ |
| unknown | Unknown | Demographics | sex | unknown | http://hl7.org/fhir/administrative-gender/ |
| american_indian_or_alaskan_native | American Indian or Alaska Native | Demographics | race | 1002-5 | urn:oid:2.16.840.1.113883.6.238/ |
| asian | Asian | Demographics | race | 2028-9 | urn:oid:2.16.840.1.113883.6.238/ |
| black_or_african_american | Black or African American | Demographics | race | 2054-5 | urn:oid:2.16.840.1.113883.6.238/ |
| native_hawaiian_or_pacific_islander | Native Hawaiian or Other Pacific Islander | Demographics | race | 2076-8 | urn:oid:2.16.840.1.113883.6.238/ |
| white | White | Demographics | race | 2106-3 | urn:oid:2.16.840.1.113883.6.238/ |
| other_race | Other Race | Demographics | race | 2131-1 | urn:oid:2.16.840.1.113883.6.238/ |
| unknown | unknown | Demographics | race | UNK | http://terminology.hl7.org/CodeSystem/v3-NullFlavor/ |
| asked_but_unknown | asked but unknown | Demographics | race | ASKU | http://terminology.hl7.org/CodeSystem/v3-NullFlavor/ |
| hispanic_or_latino | hispanic_or_latino | Demographics | ethnicity | 2135-2 | urn:oid:2.16.840.1.113883.6.238/ |
| not_hispanic_or_latino | not_hispanic_or_latino | Demographics | ethnicity | 2186-5 | urn:oid:2.16.840.1.113883.6.238/ |
| unknown | unknown | Demographics | ethnicity | UNK | http://terminology.hl7.org/CodeSystem/v3-NullFlavor/ |
| asked_but_unknown | asked_but_unknown | Demographics | ethnicity | ASKU | http://terminology.hl7.org/CodeSystem/v3-NullFlavor/ |
| phenotypic_feature | Phenotypic Feature | SubjectAssertion | assertion_type | Phenotypic-Feature | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type/ |
| disease | disease | SubjectAssertion | assertion_type | Disease | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type/ |
| comorbidity | comorbidity | SubjectAssertion | assertion_type | Comorbidity | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type/ |
| histology | histology | SubjectAssertion | assertion_type | Histology | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type/ |
| clinical_finding | clinical-finding | SubjectAssertion | assertion_type | Clinical-Finding | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/condition-type/ |
| open | open | AccessPolicy | data_access_type | open | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-type/ |
| registered | registered | AccessPolicy | data_access_type | registered | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-type/ |
| controlled | controlled | AccessPolicy | data_access_type | controlled | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-type/ |
| gsr_restricted | gsr_restricted | AccessPolicy | data_access_type | gsr-restricted | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-type/ |
| gsr_allowed | gsr_allowed | AccessPolicy | data_access_type | gsr-allowed | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-type/ |
| gru | GRU | AccessPolicy | access_policy_code | GRU | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/ |
| hmb | HMB | AccessPolicy | access_policy_code | HMB | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/ |
| ds | DS | AccessPolicy | access_policy_code | DS | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/ |
| irb | IRB | AccessPolicy | access_policy_code | IRB | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/ |
| pub | PUB | AccessPolicy | access_policy_code | PUB | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/ |
| col | COL | AccessPolicy | access_policy_code | COL | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/ |
| npu | NPU | AccessPolicy | access_policy_code | NPU | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/ |
| mds | MDS | AccessPolicy | access_policy_code | MDS | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/ |
| gso | GSO | AccessPolicy | access_policy_code | GSO | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/ |
| gsr | GSR | AccessPolicy | access_policy_code | GSR | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/research-data-access-code/ |
| not_suspected | not-suspected | Family | consanguinity | 428263003 | http://snomed.info/id/ |
| suspected | suspected | Family | consanguinity | 415684004 | http://snomed.info/id/ |
| known_present | known-present | Family | consanguinity | 410515003 | http://snomed.info/id/ |
| unknown | unknown | Family | consanguinity | 261665006 | http://snomed.info/id/ |
| available | Available | Sample | availablity_status | available | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/biospecimen-availability/ |
| available | Available | Aliquot | availablity_status | available | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/biospecimen-availability/ |
| unavailable | Unavailable | Sample | availablity_status | unavailable | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/biospecimen-availability/ |
| unavailable | Unavailable | Aliquot | availablity_status | unavailable | https://nih-ncpi.github.io/ncpi-fhir-ig-2/CodeSystem/biospecimen-availability/ |